Wednesday, July 14, 2010

Setting up BLAST

  1. change the path for blast_setup.cgi, blast_run.cgi, blast_result.cgi
  2. delete use MyModule::use Store();
  3. change the right folder's name on 78 lines on blast_setup.cgi
  4. getting all fasta seqs data, "cat Fasta/* >> allseqs.fasta"
  5. cp RDPII RDPII.nhr RDPII.nin RDPII.nsq to whatever you want to be
  6. /bioinfo/packages/BLAST/blast-2.2.22/bin/formatdb -i allseqs.fasta -p F

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