Thursday, July 15, 2010

Run RDP SeqMatch

First part:
  • Take the first attached file and upload it to http://rdp.cme.msu.edu/seqmatch/seqmatch_intro.jsp
  • Select "1" from "KNN matches"
  • Click "Submit" (do not close your browser)
  • After the job is finished, click the button "download as text file" at the result page.
  • Rename the saved file as File1.SeqMatch.KNN
  • repeat the above step 2 - 6 for the second attached file and rename the output as File2.SeqMatch.KNN
  • repeat the above step 2 - 6 for the third attached file and rename the output as File3.SeqMatch.KNN


Second part:

  • Take the first attached file and upload it to http://rdp.cme.msu.edu/seqmatch/seqmatch_intro.jsp
  • Select "1" from "KNN matches" and Select "Isolates" from "Source"
  • Click "Submit" (do not close your browser)
  • After the job is finished, click the button "download as text file" at the result page.
  • Rename the saved file as File1.SeqMatch.Source
  • repeat the above step 2 - 6 for the second attached file and rename the output as File2.SeqMatch.Source
  • repeat the above step 2 - 6 for the third attached file and rename the output as File3.SeqMatch.Source

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